[J-sec] 3D Structure Plot of Covid19 using BioPython and Py3Dmol

 

■ Covid19 (코로나19)의 구조를 3D로 보기

3D Structure of Covid

• File Format
  • pdb :PDBParser() legacy
  • cif :MMCIFParser() recent

links

• https://www.ncbi.nlm.nih.gov/Structure/pdb/6LU7
• Protein Data Bank

Pkgs

• pip install nglview
• pip install py3Dmol

• pip install pytraj

• jupyter-nbextension enable nglview --py --sys-prefix

• nglview enable
• jupyter-labextension install @jupyter-widget/jupyterlab-manager
• jupyter-labextension install nglview-js-widgets

Visualizing the 3D structure

• using nglview
• py3Dmol
• using pytraj
• squiggle